compbio.data.sequence
Class AnnotatedSequence

java.lang.Object
  compbio.data.sequence.FastaSequence
      compbio.data.sequence.AnnotatedSequence

public class AnnotatedSequence
extends FastaSequence

Constructor Summary

AnnotatedSequence(FastaSequence fsequence, float[] annotation)

AnnotatedSequence(String id, String sequence, float[] annotation)

Method Summary

boolean	equals(Object obj)
float[]	getAnnotation()
int	hashCode()
String	toString() Same as oneLineFasta

Methods inherited from class compbio.data.sequence.FastaSequence

countMatchesInSequence, getFormatedSequence, getFormattedFasta, getId, getLength, getOnelineFasta, getSequence

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AnnotatedSequence

public AnnotatedSequence(String id,
                         String sequence,
                         float[] annotation)

AnnotatedSequence

public AnnotatedSequence(FastaSequence fsequence,
                         float[] annotation)

Method Detail

getAnnotation

public float[] getAnnotation()

hashCode

public int hashCode()

Overrides:

hashCode in class FastaSequence

equals

public boolean equals(Object obj)

Overrides:

equals in class FastaSequence

toString

public String toString()

Description copied from class: FastaSequence

Same as oneLineFasta

Overrides:

toString in class FastaSequence