Package compbio.metadata

A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.

See:
Description

Interface Summary

Argument<T>

An unmodifiable view for the options and parameters, with one exception - it allows to set a value

Class Summary

ChunkHolder	Represents a chunk of a string data together with the position in a file for the next read operation.
Limit<T>	A value object containing a maximum number of sequences and a maximum average sequence length for a preset.
LimitsManager<T>	A collection of Limits
Option<T>	Command line option/flag or multiple exclusive options with no value.
Parameter<T>	A single value containing an option supported by the web service e.g.
Preset<T>	Collection of Options and Parameters with their values
PresetManager<T>	Collection of presets and methods to manipulate them @see Preset
RunnerConfig<T>	The list of Parameters and Options supported by executable.
ValueConstrain	The type and the lower and upper boundaries for numerical value.

Enum Summary

JobStatus	The status of the job.
ValueConstrain.Type

Exception Summary

JobExecutionException	JobExecutionException is thrown wherever the results of the calculation cannot be obtained.
JobSubmissionException	Exception for generic problems with JobSubmission it is often thrown as a wrapper for the lower level exceptions like IOException or DrmaaException.
LimitExceededException	This exception is thrown if the task larger in size that the limit that applies to the calculation.
ResultNotAvailableException	ResultNotAvailableException is thrown wherever the results of the calculation cannot be obtained.
UnsupportedRuntimeException	Indicates that the server could not execute native executables.
WrongParameterException	WrongParameterException is thrown wherever the RunnerConfig object does not match the actual runnable or then attempting to set the value of Argument to invalid value.

Package compbio.metadata Description

A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. They form a base layer of JAva Bioinformatics Analysis Web Services (JABAWS)

Version:

1.0 January 2010

Author:

Peter Troshin