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T

toCommand(String) - Method in class compbio.metadata.Option
Convert the option to the command string.
toCommand(String) - Method in class compbio.metadata.Parameter
 
toJalviewAnnotation() - Method in class compbio.data.sequence.MultiAnnotatedSequence
 
toString() - Method in class compbio.data.sequence.Alignment
 
toString() - Method in class compbio.data.sequence.AnnotatedSequence
 
toString() - Method in class compbio.data.sequence.FastaSequence
Same as oneLineFasta
toString() - Method in class compbio.data.sequence.MultiAnnotatedSequence
 
toString() - Method in class compbio.data.sequence.Score
 
toString() - Method in class compbio.metadata.ChunkHolder
 
toString() - Method in class compbio.metadata.Limit
 
toString() - Method in class compbio.metadata.LimitsManager
 
toString() - Method in class compbio.metadata.Option
 
toString() - Method in class compbio.metadata.Parameter
 
toString() - Method in class compbio.metadata.Preset
 
toString() - Method in class compbio.metadata.PresetManager
 
toString() - Method in class compbio.metadata.RunnerConfig
 
toString() - Method in class compbio.metadata.ValueConstrain
 

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